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Obsidian Index Service

MCP Server

Real‑time Markdown indexing for Obsidian vaults

Stale(50)
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Updated Jul 28, 2025

About

Monitors an Obsidian vault, extracts metadata and full content from Markdown files, and stores them in a concurrent‑friendly SQLite database for quick querying or integration with other MCP services.

Capabilities

Resources
Access data sources
Tools
Execute functions
Prompts
Pre-built templates
Sampling
AI model interactions

Obsidian Index Service

The Obsidian Index Service is a lightweight, event‑driven daemon that keeps an up‑to‑date SQLite snapshot of every Markdown note in an Obsidian vault. By watching the file system for create, modify, and delete events it automatically updates a local database with rich metadata—path, title, folder hierarchy, tags, timestamps, and the full text of each note. This turns a static vault into a queryable knowledge base that can be consumed by AI assistants, search tools, or any downstream service without needing to parse the Markdown files again.

Why This Matters

Developers building AI‑powered assistants often need quick, reliable access to user knowledge. Reading and parsing thousands of Markdown files on every request is slow and error‑prone. The index service solves this by providing a single, normalized data source that can be queried with SQL or exposed through an MCP server. It eliminates duplicate work, ensures consistency across tools, and allows concurrent read access thanks to SQLite’s Write‑Ahead Logging mode.

Core Capabilities

  • Real‑time file watching – Uses platform‑native watchers to detect changes instantly and update the database without manual refreshes.
  • Full metadata extraction – Pulls YAML front‑matter tags, file timestamps, and derives a clean title from the filename.
  • Content indexing – Stores the entire note body, enabling full‑text search or content retrieval by AI models.
  • Error handling & status reporting – Records processing outcomes and any error messages, making troubleshooting straightforward.
  • Docker‑friendly – Exposes the vault and database via volumes, allowing easy integration into containerized AI workflows.
  • Read‑only sharing – Other services can mount the same SQLite file read‑only, letting an MCP server or custom agent query notes while the indexer writes.

Use Cases

  • AI knowledge‑base – A Claude or GPT agent can query the SQLite database to pull in user notes, tags, and context for more grounded responses.
  • Search & recommendation engines – Build a fast search layer over the notes, feeding results to chat assistants or web interfaces.
  • Data synchronization – Keep a central database in sync with multiple local vault copies, useful for distributed teams or backup pipelines.
  • Content analytics – Run metrics on tag usage, note frequency, or folder structures without parsing Markdown each time.

Integration with AI Workflows

An MCP client can expose the SQLite database as a resource or tool, allowing an assistant to run simple SQL queries or fetch note content on demand. Because the service writes to the database in WAL mode, multiple clients can read concurrently without locking issues. The daemon’s environment‑variable configuration makes it trivial to plug into existing Docker‑based AI stacks, while the optional command‑line flags provide flexibility for local debugging or one‑off scans.

Distinctive Advantages

  • Zero‑maintenance indexing – Once started, the service requires no further intervention; it keeps the database current automatically.
  • Portable data format – SQLite is universally supported, so downstream services can run on any platform without additional dependencies.
  • Minimal footprint – The daemon is lightweight and can run inside a small container, making it ideal for edge or embedded AI assistants.
  • Open‑source and extensible – Built on top of the Obsidian plugin API, developers can easily adapt or extend it to support other note formats or additional metadata fields.

In summary, the Obsidian Index Service turns a raw Markdown vault into a live, searchable knowledge graph that AI assistants can tap into instantly. Its combination of real‑time watching, comprehensive metadata capture, and Docker compatibility makes it a practical foundation for any AI application that needs reliable access to user‑generated content.