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Paperscraper MCP Server

MCP Server

Efficient metadata scraping for scientific literature

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Updated Mar 19, 2025

About

A Model Context Protocol server that retrieves publication metadata from PubMed, arXiv, MedRxiv, BioRxiv, and ChemRxiv, streamlining data collection for researchers.

Capabilities

Resources
Access data sources
Tools
Execute functions
Prompts
Pre-built templates
Sampling
AI model interactions

Paperscraper MCP Server Demo

Overview

The Paperscraper MCP Server provides a unified, AI‑friendly interface for harvesting scholarly publication metadata from the most widely used preprint and journal repositories. By exposing a single set of endpoints for PubMed, arXiv, MedRxiv, BioRxiv and ChemRxiv, the server removes the need for developers to write custom scrapers or handle each platform’s idiosyncratic APIs. Instead, an AI assistant can issue a concise request and receive structured data in JSON format that is ready for downstream analysis, indexing or integration into knowledge graphs.

Problem Solved

Research workflows increasingly rely on rapid access to up‑to‑date literature. Traditional methods require manual queries, API keys, rate‑limit handling, and parsing of heterogeneous response formats. The Paperscraper MCP Server abstracts these complexities, delivering a single, consistent contract that AI assistants can invoke. This eliminates repetitive boilerplate code and ensures that the data retrieved is clean, standardized, and immediately usable for tasks such as citation analysis, trend monitoring or literature reviews.

Core Capabilities

  • Unified Metadata Retrieval: A single tool call retrieves title, authors, abstract, publication date, DOI, and source platform for any query string.
  • Source‑specific Filters: Optional parameters let users constrain results to a particular repository or date range, providing fine‑grained control over the dataset.
  • Pagination & Throttling: The server handles large result sets internally, returning paginated responses that respect each source’s rate limits.
  • Robust Error Handling: Meaningful error messages are returned when a source is unreachable or the query yields no results, enabling graceful fallback strategies in AI workflows.
  • Extensible Prompt Templates: Pre‑defined prompts guide the assistant to format queries or interpret results, reducing the cognitive load on developers.

Use Cases & Scenarios

  • Literature Review Automation: An AI assistant can generate a curated list of recent papers on a topic, complete with metadata for citation management tools.
  • Real‑Time Trend Analysis: By periodically querying key terms, developers can feed the assistant live data streams that highlight emerging research fronts.
  • Academic Recommendation Engines: The server’s structured output can be fed into recommendation algorithms that surface relevant preprints or journal articles to researchers.
  • Data Mining for NLP Models: Researchers building language models on scientific text can use the MCP to quickly assemble large, diverse corpora from multiple repositories.

Integration into AI Workflows

The Paperscraper MCP Server plugs directly into any Claude or similar assistant that supports the Model Context Protocol. A developer can add a single resource definition to their MCP client, then invoke the scraper tool within prompts. The assistant receives the metadata instantly, allowing for on‑the‑fly summarization, citation formatting or knowledge graph updates without leaving the conversational context. Because the server adheres to MCP standards, it can be combined with other tools—such as summarization engines or data visualization services—to build end‑to‑end research pipelines that are both modular and maintainable.

Unique Advantages

Unlike generic web scrapers, this MCP server guarantees compliance with each repository’s usage policies and handles authentication transparently. Its pre‑defined prompt templates reduce the learning curve for developers, while the consistent JSON schema eliminates downstream parsing headaches. By centralizing access to five major scientific repositories, the server offers a one‑stop solution that scales from single‑user research assistants to institutional knowledge bases, making it an indispensable component for developers building AI‑powered scholarly tools.